AMP Meeting Paths are a convenient way to tailor your meeting experience around the content you most want to see.The 2019 Program Committee has carefully examined the scientific program and identified six paths that will direct you to sessions based on your favored area of interest. Select the link below to get started or scroll down to view the full program.
Quick Links |
Thursday |
Friday |
Saturday |
Tuesday, November 5, 2019 |
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GENERAL INFORMATION |
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8:00am - 4:30pm |
AMP Reference Materials Forum |
8:00am - 5:00pm |
Advocacy Day (NEW!) (Separate Registration) |
11:00am - 6:00pm |
Attendee, Speaker, and Exhibitor Registration and Check-In |
12:00pm - 5:30pm |
Guest Society Symposia & Pre-Meeting Workshops (NEW!) (Separate Registration) |
2:00pm - 5:00pm |
Pre-Meeting Workshop: Hands On Genomics with IGV (Separate Registration) |
6:30pm |
Board of Directors Dinner (Invitation Only) |
Wednesday, November 6, 2019 |
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GENERAL INFORMATION |
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7:00am - 5:00pm |
Attendee, Speaker, and Exhibitor Registration and Check-In |
7:30am - 11:30am |
Board of Directors Meeting (Invitation Only) |
8:00am - 5:00pm |
Corporate Workshop Day (No Registration Required!) |
8:30am - 3:45pm |
Molecular Pathology Outreach Course (MPOC)(Separate Registration) |
1:00pm - 6:00pm |
Committee Meetings (Invitation Only) |
6:00pm - 7:00pm |
Volunteer Appreciation Reception (Invitation Only) |
6:30pm - 8:30pm |
Special Event: Advances in Predictive Biomarkers for Immune Checkpoint Inhibitors in Lung Cancer* |
7:00pm - 8:00pm |
Trainee Networking Hour |
Thursday, November 7, 2019 |
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GENERAL INFORMATION |
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6:30am - 8:00am |
Poster Set-Up |
6:45am - 5:00pm |
Attendee, Speaker, and Exhibitor Registration and Check-In |
6:45am - 8:00am |
Continental Breakfast |
11:30am - 4:30pm |
Expo Hall Open |
5:45pm - 7:00pm |
Welcome Reception (In the Expo Hall)(Supported by QIAGEN) |
SCIENTIFIC INFORMATION |
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7:00am - 8:00am |
TARGETED TOPICSArtificial Intelligence and Diagnostics Microbiology: Friend or Foe?Use of Machine Learning Algorithms to Support Clinical Microbiology Culture Interpretation Karissa Culbreath, PhD, TriCore Reference Laboratories, Albuquerque, NM, USA Detection of Outbreaks and Unusual Pathogen using AI and Machine Learning Amy Leber, PhD, Nationwide Childrens Hospital, Colubmus, OH, USA Case Studies in GeneticsUltra-hypermutated Pediatric Glioblastoma of Lynch Syndrome Mimicking Constitutional Mismatch Repair Deficiency Syndrome Chen Yang, MD, PhD, Virginia Commonwealth University, Richmond, VA, USA A Case of T-PLL with EZH2 Mutation; EZH2 the Sword or the Shield? Panieh Terraf, PhD, Harvard Medical School - Brigham and Women's Hospital, Boston, MA, USA Exome Reanalysis in a Patient with a Somatic CN-LOH in 17p and TP53 Mutation, and a Germline DNAJC21 Biallelic Mutation Associated with Myelodysplastic Susceptibility Elan Hahn, MD, University of Toronto, Toronto, Ontario, Canada Somatic Mosaic IDH1 Mutation in a Case of Maffucci Syndrome Diana Bryk, MD, New York Presbyterian - Columbia, New York, NY, USA Case Studies in HematopathologyA Surprising Finding in Primary Cutaneous CD8-positive Aggressive Epidermotropic Cytotoxic T-cell Lymphoma Mark Evans, MD, University of California, Irvine, Orange, CA, USA “Clonal Selection Following FLT3 Tyrosine Kinase Inhibitor Treatment for Acute Myeloid Leukemia” Adam Fisch, Brigham and Women's Hospital, Boston, MA, USA Identification of a Cryptic ABL1 Rearrangement in a Refractory Acute Myeloid Leukemia Patient with Diploid Karyotype by Conventional Cytogenetics Arash Ronaghy, MD, PhD, MD Anderson Cancer Center, Houston, TX, USA Muddy Waters: A Report of Granulocytes Infusion Confounding Next-Generation Sequencing Interpretation Tareq Qdaisat, MD, University of Nebraska Medical Center, Omaha, NE, USA Case Studies in Solid TumorsCompound EGFR and BRAF variants in NSCLC against the backdrop of suspected MEN2A Jeremy Adler, MD, Pennsylvania Hospital, UPHS, Philadelphia, PA, USA Expanded Next Generation Sequencing Panel Detects A Rare EGFR Kinase Domain Duplication In A Patient with Metastatic Lung Cancer Jong Kim, MD, Cedars-Sinai Medical Center, Los Angeles, CA, USA Pitfalls in Identification of Mismatch Repair Deficiency: An Unusual Pulmonary Intimal Sarcoma. Wanying Zhang, MD, New York Presbyterian Hospital, New York, NY, USA EGFR-Mutated Lung Adenocarcinoma with Early Resistance to Osimertinib Brennan Decker, MD, PhD, Brigham and Women's Hospital, Boston, MA, USA |
8:00am - 8:15am |
Break |
8:15am - 8:30am |
Opening RemarksNeal Lindeman, MD
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8:30am - 9:45am |
AMP Award for Excellence in Molecular Diagnostics: Presentation and LectureEfficient Use of the Available DNA - A Career Russell Higuchi, PhD, Cepheid, Sunnyvale, CA, USA
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9:45am -10:00am |
Coffee Break |
10:00am - 11:30am |
SYMPOSIA SESSIONSGenetics of Sensitivity & Resistance to Non-Chemo AgentsTargeting Immune Signaling Checkpoints in Acute Myeloid Leukemia Ivana Gojo, MD, Johns Hopkins, Baltimore, MD, USA Choosing Patient Therapy with Dynamic BH3 Profiling Anthony Letai, MD, PhD, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA USA Diverse Mechanisms of Acquired Resistance to CAR T Cell Immunotherapy Andrei Thomas-Tikhonenko, PhD, Children's Hospital of Philadelphia, Philadelphia, PA, USA Criminal Investigations & ForensicsRapid DNA: From Research to Field Amanda Sozer, PhD, SNA International, Washington, DC, USA Forensic DNA Testing at the Crossroads of Science, Law, and Policy Frederick Bieber, PhD, Harvard Medical School, Boston, MA, USA Basics of Genetic Genealogy and Its Impact on Forensic Investigation Howard Cash, Gene Codes Corporation, Ann Arbor, MI, USA CRISPR-CAS: Applications for Diagnostics & Therapeutics of Human DiseasesGetting More from your MiSeq with DASH and FLASH Emily Crawford, PhD, Chan Zuckerberg Biohub, San Francisco, CA USA Assessing Unintended Off-Target Mutations Caused by Cas9 and Other Gene Editing Enzymes Vikram Pattanayak, MD, PhD, Massachusetts General Hospital, Boston, MA, USA |
11:30am - 12:45pm |
General Lunch - Visit Expo Hall and View PostersNetworking Lunches (Schedule)Innovation Spotlight Stage (Schedule) |
12:45pm - 2:00pm |
BREAKOUT SESSIONSState of PharmacogeneticsClinical Implementation of Pharmacogenomics Philip Empey, PharmD, PhD, University of Pittsburgh, UPMC, Pittsburg, PA, USA What’s New in Pharmacogenetics? Victoria M. Pratt. PhD, Indiana University School of Medicine, Indianapolis, IN, USA Reimbursement: It’s Never too Late to Start Getting PaidAnthony Sireci, MD, Loxo Oncology, Stamford, CT, USA Aaron Bossler, MD, PhD, University of Iowa, Iowa City, IA, USA Demystifying Molecular testing coverage and policies: MolDX and Medicare Gabriel Bien-Willner. MD, PhD, Palmetto GBA, TX, USA Diagnostic Stewardship for Molecular TestingKimberle Chapin, MD, Brown Biology and Medicine, Providence, RI, USA The Art of Navigating Molecular Infectious Disease Test Results: From Ordering To Application In the Clinical Setting Sejal Morjaria, Memorial Sloan Kettering Cancer Center, New York, NY, USA Biobanking and 3D-Organoid TechnologyPerspective on Establishing a Biorepository for Clinical and Research Use Kristy Crooks, PhD, University of Colorado, Aurora, CO, USA Profiling the DNA Damage Repair Capacity of High Grade Serous Ovarian Tumors using Patient-Derived Organoids Sarah Hill, MD, PhD, Dana-Farber Cancer Institute, Boston, MA, USA Is Bigger Always Better? Targeted Versus Genome Oncology TestsBig Data and Little Patients: Targeted Sequencing for Pediatric Brain Tumors Sarah Leary, MD, MS, Seattle Children's Hospital, University of Washington and Fred Hutchinson Cancer Research Center, Seattle, WA, USA Bigger is Better: More Cancer Genes in More Patients Wendy Chung, MD, PhD, Columbia University, New York, NY, USA Redefining the Value of the LabBeth Bailey, TriCore Reference Laboratories, Albuquerque, NM, USA Khosrow R. Shotorbani, MBA, MT, Lab 2.0 Strategic Services, LLC and Project Santa Fe Foundation |
2:00pm - 3:45pm |
Coffee Break - Visit Expo Hall and View PostersAMP Central Activities (Schedule)Innovation Spotlight Stage (Schedule) |
3:45pm - 4:30pm |
BREAKOUT SESSIONSAMP CPC’s Tumor Mutational Burden Working Group: Update & Open Comment ForumLarissa Furtado, MD, St. Jude Children's Research Hospital, Memphis, TN, USA AMP CPC’s ID Multiplex Working Group: Update & Open Comment ForumMichael Lewinski, PhD, Roche Molecular Systems, Inc, Pleasanton, CA, USA AMP CPC’s In Silico Reference Materials Working Group: Update & Open Comment ForumEric Duncavage, MD, Washington University, Saint Louis, MO, USA Justin Zook, PhD, National Inst of Standards & Tech, Gaithersburg, MD, USA AMP CPC’s T & B Cell Clonality Working Group : Update & Open Comment ForumDavid S. Viswanatha, MD, Mayo Clinic and Foundation, Rochester, MN, USA
The First 25 Years of AMP: Our Society’s Groundbreaking Past and Future OpportunitiesStanding of Molecular within the Pathology/Lab Profession Karen Kaul, MD, PhD, NorthShore University Health System, Evanston, IL, USA Evolving Technologies and Automation Karl Voelkerding, MD, University of Utah School of Medicine, Salt Lake City, UT, USA Panel Discussion Federico Monzon, MD, Castle Biosciences, Friendswood, TX, USA Aaron Bossler, MD, PhD, University of Iowa, Iowa City, IA, USA Yaolin Zhou, MD, Univ of Oklahoma Health Sciences Center, Oklahoma City, OK, USA Helen Fernandes, PhD, Columbia University Medical Center, New York, NY, USA |
4:30pm- 4:45pm |
Break |
4:45pm - 5:45pm |
PLENARY SESSIONPolygenic Risk Scores: Translating Research Advances into the Clinical DomainUsing Polygenic Risk Scores (PRS) for Breast Cancer to Inform Screening: Model Fit, Calibration, and Utility Peter Kraft, PhD, Harvard T.H. Chan School of Public Health, Boston, MA, USA |
5:45pm - 7:00pm |
Welcome Reception (In the Expo Hall)(Supported by QIAGEN) AMP Central Activities (Schedule) |
7:30pm - 8:30pm |
Special Event: Expert Insights into Identifying and Treating TRK Fusion Solid Tumors in Adults and Children |
Friday, November 8, 2019 |
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GENERAL INFORMATION |
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6:45am - 5:00pm |
Attendee, Speaker, and Exhibitor Registration and Check-In |
6:45am - 8:00am |
Continental Breakfast |
9:00am - 4:00pm |
Expo Hall Open |
SCIENTIFIC INFORMATION |
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7:00am - 8:00am |
TARGETED TOPICSHow to Validate Rare FindingsHow to Validate Rare Findings - Focus on Novel Fusions John Iafrate, MD, PhD, Massachusetts General Hospital, Boston, MA, USA Did I Find the Right Needle in the Haystack? Sensitivity and Specificity Challenges Revealed by Ultra-accurate NGS Rosana Risques, PhD, UW Pathology, Seattle, WA, USA Behind the Curtain: Developing Clinical Knowledgebase SystemsMalachi Griffith, PhD, Washington University School of Medicine, St. Louis, MO, USA Blood Bank & HLABlood Group Genotyping from High Density Arrays to Whole Genomes Bill Lane, MD, PhD, Brigham and Women's Hospital, Boston, MA, USA Novel Mechanisms of Acquired Resistance to Targeted Therapies in CancerFei Dong, MD, Brigham and Women's Hospital, Boston, MA, USA Case Studies in HematopathologyB-lymphoblastic Leukemia with ZNF384 Gene Rearrangement Shweta Bhavsar, MBBs, MD, University of Pittsburgh Medical Center, Pittsburgh, PA, USA Molecular Diagnosis of MDS in a Non-Diagnostic Bone Marrow Specimen Jeffrey SoRelle, MD, University of Texas Southwestern Medical Center, Dallas, TX, USA The Role of Lymphoma Sequencing Panel in the Diagnosis of Pediatric-Type Follicular Lymphoma Guang Yang, MD, PhD, University of Pennsylvania, Philadelphia, PA, USA 5q- in a Patient with Chronic Myelogenous Leukemia in Accelerated Phase James Corines, DO, SUNY Upstate Medical University, Syracuse, NY, USA |
8:00am - 8:15am |
Break |
8:15am - 9:45am |
SYMPOSIA SESSIONSEmerging Tech for Circulating Tumor Cells, Beyond Counting/ctDNA Alternative FluidsAdvances in Liquid Biopsy: Isolation, Analysis and Expansion of CTCs Sunitha Nagrath, PhD, University of Michigan, Ann Arbor, MI, USA Microfluidic Platforms for the Efficient Isolation of Circulating Leukemia Cells and Circulating Plasma Cells Steven A. Soper, PhD, The University of Kansas, Lawrence, KS, USA Carrier Screening: The Good, The Bad, and The UglyThe Limitations and Consequences of Ethnicity-specific Guidelines for Carrier Screening Dale Muzzey, PhD, Myriad Women's Health, Inc., San Francisco, CA, USA Current Complexities and Future Directions of Expanded Carrier Screening Nicole Faulkner, PhD, FACMGG, Invitae Corporation, San Francsico, CA, USA Technological Advances and Detections Rates: Demystifying the Influence of Ethnicity on Carrier Detection and Residual Risk Lisa Edelmann, PhD, Sema4, New York, NY, USA Structural Variation Detection in Human DiseasePatterns of Complex Structural Variation across Thousands of Cancer Whole Genomes Marcin Imielinski, MD, PhD, Weill Cornell Medical College, New York, NY, USA Identification and Characterization of Cryptic Structural Variation in Human Genomes Ryan Mills, PhD, University of Michigan, Ann Arbor, MI, USA |
9:45am - 10:45am |
Coffee Break - Visit Expo Hall and View PostersInnovation Spotlight Stage (Schedule)AMP Central Activities (Schedule) |
10:45am - 12:15pm |
BREAKOUT SESSIONSPicking a LIMS SystemDo-It-Yourself Molecular LIMS Long P. Le, MD, PhD, Massachusetts General Hospital, Charlestown, MA, USA
Kristina Cusmano-Ozog, MD, Children’s National, Palo Alto, CA, USA Development of a Laboratory Information System to Support Clinical NGS Testing Michael Kluk, MD, PhD, Weill Cornell Medicine, New York, NY, USA Hands-on Workshop: Variant Interpretation & ClassificationMark Routbort, MD, PhD, University of Texas MD Anderson Cancer Center, Houston, TX, USA Updates on Emerging TechnologiesNanopore Sequencing Comes of Age Miten Jain, PhD, University of California Santa Cruz, Santa Cruz, CA, USA Extreme Molecular Diagnostics Carl Wittwer, MD, PhD, University of Utah, Salt Lake City, UT, USA Process Validation and Quality Assurance Around the WorldESP Molecular Pathology WG: Diagnosis and Clinical Research Reproducibility Giorgio Stanta, MD, PhD, University of Trieste, Duino-Aurisina, Italy Quality Assessment Experience in Brazil Roberta Sitnik, MSc, PhD, Departamento de Patologia Clínica e Anatomia Patológica, São Paulo, Brazil Metagenomics in Prime TimePanel Discussion Robert Schlaberg, MD, MPH, IDbyDNA, Salt Lake City, UT, USA Charles Chiu, MD, PhD, University of California, San Francisco, CA, USA Erin Graf, PhD, Mayo Clinic Hospital, Arizona, Phoenix, AZ, USA Patricia Simner, MSc, PhD, Johns Hopkins University School of Medicine, Baltimore, MD, USA |
12:15pm - 1:30pm |
General Lunch - Visit Expo Hall and View PostersNetworking Lunches (Schedule)Innovation Spotlight Stage (Schedule)
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1:30pm - 2:45pm |
BREAKOUT SESSIONSCell-Free DNA Testing for Autosomal Dominant DisordersNon-invasive Prenatal Sequencing for Multiple Mendelian Monogenic Disorders using Circulating Cell-free Fetal DNA Shashikant Kulkarni, PhD, FACMG, Baylor College of Medicine, Houston, TX, USA Prenatal Diagnosis: The Next Generation Mark Evans, MD, Comprehensive Genetics, New York, NY, USA Practical Approaches to Centralizing (or Decentralizing) Molecular TestingCentralized Testing in Molecular Pathology via Lean Laboratory Design John Longshore, PhD, Carolinas Pathology Group, Charlotte, NC, USA Molecular Laboratory Organization: the University of Washington Experience Daniel E. Sabath, MD, PhD, University of Washington School of Medicine, Seattle, WA, USA Point Counterpoint: Who Owns Molecular Infectious Disease Testing?Frederick Nolte, PhD, Medical Univ of South Carolina, Charleston, SC, USA
Nathan Ledeboer, PhD, Medical College of Wisconsin, Milwaukee, WI, USA Updates in Myeloma GenomicsAdvances in Multiple Myeloma Genomics Brian A. Walker, BSc, PhD, University of Arkansas for Medical Sciences, Little Rock, AR Molecular Monitoring of Myeloma Nikhil Munshi, MD, Dana-Farber Cancer Institute, Boston, MA, USA New Players in Reimbursement: Laboratory Benefit Managers(Sponsored by the AMP Economic Affairs Committee)Panel Discussion Geoffrey Baird, MD, PhD, University of Washington, Seattle, Washington, USA Trish Brown, MS, LCGC, Illumina, Inc., San Diego, CA, USA Heather Agostinelli, Xifin, Inc., San Diego, CA, USA |
2:45pm - 4:00pm |
Coffee Break - Visit Expo Hall and View Posters(Even-numbered posters Attended)
AMP Central Activities (Schedule)Innovation Spotlight Stage (Schedule) |
4:00pm - 5:00pm |
PLENARY SESSIONClimate Change and Global Surveillance of Emerging PathogensArturo Casadevall, MD, PhD, Johns Hopkins, Baltimore, MD, USA |
5:00pm - 5:15pm |
Break |
5:15pm - 6:30pm |
Business Meeting and Awards Session(Open to All Registered Attendees) |
7:00pm - 10:30pm |
Amazing Molecular Party (25th Anniversary Celebration)(Separate Registration) |
Saturday, November 9, 2019 |
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GENERAL INFORMATION |
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6:45am - 2:00pm |
Attendee, Speaker, and Exhibitor Registration and Check-In |
6:45am - 8:00am |
Continental Breakfast |
9:00am - 1:30pm |
Expo Hall Open |
12:30pm - 1:30pm |
Poster Removal |
SCIENTIFIC INFORMATION |
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7:00am - 8:00am |
TARGETED TOPICSGenetics & Immunity In Bone Marrow Failure SyndromesGenetic Pathways of Myeloid Transformation in Bone Marrow Failure Syndromes Coleman Lindsley, MD, PhD, Dana-Farber Cancer Institute, Boston, MA, USA A Review of FGFR Related Inherited DisordersThe Skeletal Dysplasias; the Long and Short of It Deborah Krakow, FACMG, UCLA School of Medicine, Los Angeles, CA USA Integrating Genomics into the EHRBarriers to Integrating Genomics More Fully into the EHR Brian Shirts, MD, PhD, University of Washington, Seattle, WA, USA Methylation Analysis TechnologiesDNA Methylation and Machine Learning in Molecular Pathology for Diagnosis and Clinical Management Matija Snuderl, MD, NYU Langone Medical Center, New York, NY, USA Oncogene Activation by Pan-Cancer DNA Hypermethylation Wei Li, PhD, Baylor College of Medicine, Houston, TX, USA Liquid Biopsy in Infection & CancerOpportunities and Challenges of Fungal Cell-Free DNA Testing for Diagnosis of Invasive Fungal Infection Niaz Banaei, MD, Stanford University, Stanford, CA, USA Detecting HPV Circulating Tumor DNA by Liquid Biopsy Daniel Higginson, MD, Memorial Sloan Kettering Cancer Center, New York, NY, USA Case Studies in Solid TumorsAn Interesting Case Involving a CIC-NUTM1 Rearranged Epitheliod Tumor Latrice Landry, PhD, MMSc, MS, Dana Farber Cancer Institute/ Brigham and Women's Hospital, Boston, MA, USA Detection of Rare Fusion using Foundation One and Oncomine Tests: A Male in his 20’s with an Aggressive Orbital Tumor Terri Jones, MD, University of Pittsburgh Medical Center, Pittsburgh, PA, USA A Case of Cutaneous Lymphoma with PCM1-JAK2 Rearrangement Talent Theparee, MD, Stanford Healthcare, Stanford, CA, USA Microsatellites: Instability in an Apparently Stable World Patrick Leach, BS, TriCore Reference Laboratories, Albuquerque, NM, USA |
8:00am - 8:15am |
Break |
8:15am - 9:45am |
SYMPOSIA SESSIONSStandards and Applications of RNA-seq in CancerRNA-seq for the Detection of Gene Fusions and Other Alterations in Cancer Kevin Halling, MD, PhD, Mayo Clinic, Rochester, MN, USA Applications of RNA-Seq in Cancer Olena Vaske, PhD, FCCMG, University of California, Santa Cruz, CA, USA Precision Medicine in Infectious DiseaseGenotypic Antiretroviral Resistance Testing Benjamin Pinsky, MD, PhD, Stanford University School of Medicine, Palo Alto, CA, USA Bacteriome and Mycobiome Imbalance and Design of Precision Medicine and Nutrition Mahmoud A. Ghannoum, PhD, EMBA, FIDSA,FAAM, University Hospitals Cleveland Medical Center, Cleveland, OH, USA Incidental Findings from Somatic Testing/Cancer PredispositionsApproaches to Returning Germline Results in an Era of Agnostic Cancer Predisposition Testing Michael F. Walsh, MD, Memorial Sloan Kettering Cancer Center, New York, NY, USA The Evolving Landscape of Clinical Genomic Testing: Elective Genome Sequencing Birgit Funke, Dr, Veritas Genetics, Newton, MA, USA What to Expect When You Find the Unexpected: Pregnancy and Incidental Findings in Noninvasive Prenatal Screening Susan Hancock, MS, Myriad Women's Health, Salt Lake City, UT, USA |
9:45am - 10:45am |
Coffee Break - Visit Expo Hall and View Posters(Odd-numbered posters Attended)
Innovation Spotlight Stage (Schedule) |
10:45am - 12:15pm |
BREAKOUT SESSIONSWhole Genome Sequencing for Bacterial Strain Typing & Genomic SurveillanceReal-time Clinical Applications for Whole Genome Sequencing of Bacteria Brad Cookson,MD, PhD, University of Washington, Seattle, WA, USA Bacterial Strain Typing in the Age of Whole Genome Sequencing: Promises and Pitfalls Richard Goering, PhD, Creighton University School of Medicine, Omaha, NE, USA Tumor Mutation Burden, Clinical Utility/Efficacy and Harmonization ProjectTumor Mutational Burden (TMB): Harmonization and Future Application Jeff Allen, PhD, Friends of Cancer Research, Washington, DC, USA TMB: The Case for Understanding and Harmonizing Complex Biomarkers Albrecht Stenzinger, MD, University Hospital Heidelberg, Heidelberg, Germany Featured Selections from the Journal of Molecular Diagnostics in 2019James Versalovic, MD, PhD, Texas Children's Hospital, Houston, TX, USA Kevin Halling, MD, PhD, Mayo Clinic, Rochester, MN, USA Stephen Lincoln, Invitae, San Francisco, CA, USA Hands-on Workshop: Informatic Tools in MetagenomicsAlexander L. Greninger, MD, PhD, MS, MPhil, University of Washington, Seattle, WA, USA Samia Naccache, PhD, LabCorp, Seattle, WA, USA Future of Molecular PathologyPanel Discussion Gabriel Bien-Willner, MD, PhD, Palemtto GBA, TX, USA Sam Caughron, MD, MAWD Pathology Group, P.A., Lenexa, KS, USA Karen Kaul, MD, PhD, NorthShore University Health System, Evanston, IL, USA Federico Monzon, MD, Castle Biosciences, Friendswood, TX, USA Timothy Stenzel, MD, PhD, FACMG, FCAP, FDA, Rockville, MD, USA Pipeline ShowcaseJeremy Segal, MD, PhD, University of Chicago, IL, USA Ahmet Zehir, PhD, Memorial Sloan Kettering Cancer Center, New York, NY, USA |
12:15pm - 1:30pm |
General Lunch - Visit Expo Hall, and View PostersAMP Central Activities (Schedule)
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1:30pm - 2:45pm |
BREAKOUT SESSIONSPlatform Presentations of Selected Abstracts Abstracts are selected by the Program Committee Platform Presentations of Selected Genetics AbstractsG008 - Germline RAD51B loss-of-function variants confer susceptibility to hereditary breast and ovarian cancers and result in homologous recombination deficient tumors Diana Mandelker, MD, PhD, Memorial Sloan Kettering Cancer Center, New York, NY, USA G014 - A framework of critical considerations in interpretation of NGS based tests for germline disorders - On Behalf of CLSI Document Development Committee (DDC) on Nucleic Acid Sequencing (MM09) Avni Santani, PhD, Children's Hospital of Philadelphia, Philadelphia, PA, USA G023 - Integrated Germline and Somatic Analysis Identifies Actionable Cancer Predisposing Germline Mutations in 9,734 Patients with Advanced Cancers Liying Zhang, MD, PhD, Memorial Slone Kettering Cancer Center, New York, NY, USA G036 - Significance Associated with Phenotype (SAP) Score – A Method for Ranking Genes and Genomic Regions Based on Sample Phenotype Jianling Ji, MD, MS, Children's Hospital of Los Angeles, South Pasadena, CA, USA G010 - A Method to Missense Madness: Improving Clinical Variant Interpretation with a Pathway-Focused Functional Assay Sarah Brnich, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA Platform Presentations of Selected Hematopathology AbstractsH034 - Identification of Neoplastic Clonal T-cell Sequences in Unrelated Healthy Individuals: Limitations of High Throughput TRG Sequencing for Minimal Residual Disease (MRD) Analysis Siddhartha Sen, MD, PhD, Duke University Medical Center, Durham, NC, USA H039 - Measurable Residual Disease Monitoring for Patients with Acute Myeloid Leukemia Following Hematopoietic Cell Transplantation Using Error Corrected Hybrid Capture Next Generation Sequencing Vidya Balagopal, PhD, University of Chicago, Chicago, IL, USA H021 - IGH locus assessment using hybrid-capture, a proof-of-concept study Etienne Mahe, MD, MSc, FRCPC, FCAP, University of Calgary, Calgary, Alberta, Canada H027 - Convergence on Genomic Abrogation of the DNA Damage Response Pathway in CLL is Observed in Patients with Loss of18p Waihay Wong, Brigham and Women's Hospital and Harvard Medical School H020 - IDH1 p.S280F mutation is potentially a novel mechanism of resistance to Ivosidenib therapy in an IDH1 positive acute myeloid leukemia Zoltan Oltvai, MD, University of Pittsburgh, Pittsburgh, PA, USA Platform Presentations of Selected Infectious Diseases AbstractsID019 - Mycoplasma genitalium assay results from high and low risk populations: implications for sexually transmitted infection panel menu Kimberle Chapin, MD, Brown Biology and Medicine, Providence, RI, USA ID018 - Cell-free RNA is More Sensitive than DNA for the Detection of Pediatric Bacterial Sepsis via Shotgun Metagenomic Sequencing Caitlin Dougherty, The Children's Hospital of Philadelphia, Philadelphia, PA, USA ID020 - Clinical and Histologic Features of Patients Tested Using the BioFire FilmArray Gastrointestinal Panel Jonathan Mowers, MD, PhD, Michigan Medicine, Ann Arbor, MI, USA ID043 - Investigation of amplicon sequencing technology in diagnosis of drug resistant tuberculosis by testing FFPE specimens Nanying Che, PhD, Departement of Pathology, Beijing Chest Hospitial, Medical Capital University, Beijing, China ID003 - Microbial Cell-free DNA Sequencing for Multiplexed Detection and Quantitation of Cytomegalovirus, Epstein-Barr Virus, and BK Virus Timothy Blauwkamp, Karius, Inc., Iowa City, CA, USA Platform Presentations of Selected Informatics AbstractsI031 - Platform-agnostic deployment of bioinformatics pipelines for clinical NGS assays using containers, infrastructure orchestration, and workflow manager Sabah Kadri, PhD, Lurie Children's Hospital of Chicago, Chicago, IL, USA I013 - Benchmarks for Difficult-to-Sequence Genes and Structural Variants Justin Zook, PhD, National Inst of Standards & Tech, Gaithersburg, MD, USA I040 - Machine Learning Applications for Patient Testing: Computational Assessment of MSI by NGS in the Clinical Laboratory Gregory Omerza, PhD, The Jackson Laboratory, Farmington, CT, USA I020 - Mixed Reality for a Precision Medicine Laboratory: the Future is Now! Andrea Sboner, PhD, Weill Cornell Medicine, New York, NY, USA I004 - Impact of Next Generation Sequencing Panel Composition on Tumor Mutation Burden Calculation – In Silico Comparison of Frequently Utilized Panels Nicholas Bevins, MD, PhD, University of California at San Diego, San Diego, CA, USA Platform Presentations of Selected Solid Tumors AbstractsST132 - The Impact of Clinical Molecular Testing and Precision Medicine in Thyroid Cancer Dora Dias-Santagata, PhD, FACMG, Massachusetts General Hospital - Harvard Medical School, Boston, MA, USA ST009 - Improved Detection of MET Exon 14 Skipping Mutations in Lung Adenocarcinoma with Combined DNA/RNA Testing and Refined Analysis Methods David Manthei, MD, PhD, University of Michigan, Department of Pathology, Ann Arbor, MI, USA ST010 - Detection of Point Mutations in Paediatric Low Grade Glioma (PLGG) and Diffuse Intrinsic Pontine Glioma (DIPG) Patients: Validation of a Novel Liquid Biopsy Assay Monique Johnson, MSc, The Hospital for Sick Children, Toronto, Ontario, Canada ST015 - Clonal hematopoiesis mutations in plasma cfDNA RAS/BRAF genotyping of metastatic colorectal cancer Fei Huang, Zhongshan Hospital, Fudan University, Shanghai, China ST094 - STK11 Loss of Function Variants Mediate Immune Evasion in NSCLC via Dysregulation of the FAK/Hippo Signaling Axis and Subsequent Alterations in Tumor-Intrinsic Cytokine Expression Liam Donnelly, MD, University of Vermont Medical Center, Burlington, VT, USA Platform Presentations of Selected Technical Topics AbstractsTT011 - A Comprehensive Assessment of onco-panel sequencing across multiple laboratories and technologies Joshua Xu TT066 - Variants Reported by Tumor-Only Clinical Oncology NGS Testing Are Frequently Found in the Germline of Pediatric Patients Azhar Saeed, MD, MSc, University of Kansas Medical Center, Kansas City, KS, USA TT071 - EXaCT-2: Augmented Whole Exome Sequencing Optimized for Clinical Testing in Oncology Duane Hassane, PhD, Weill Cornell Medicine, New York, NY, USA TT072 - Dissimilarity score (DisScore): identifying potential discordance between anatomic pathology and mutation landscape in the evaluation of clinical sequencing as part of a molecular tumor board Grzegorz Gurda, MD, PhD, Gundersen Health System, La Crosse, WI, USA TT055 - Digital Methylation Specific Multiplex Ligation-Dependent Probe Amplification: A novel MLPA based technique for assessing promoter methylation status in cancer Jan Smout, MSc, MRC Holland, Amsterdam, Netherlands The Future of the AMP v. Myriad Decision: Exploring Potential Impacts on Multigene Panel Testing and Patient Care(Sponsored by the AMP Professional Relations Committee) Panel Discussion Charles Duan, JD, The R Street Institute, Washington, DC, USA |
2:45pm - 3:00pm |
Break |
3:00pm - 3:45pm |
Subdivision Open Forums |
3:45pm - 4:00pm |
Break |
4:00pm - 5:00pm |
PLENARY SESSIONLiquid Biopsies for MRD/Opportunities & Pitfalls in Monitoring AML PatientsMRD in AML - Promises, Problems and Perspectives Christian Thiede, MD, University of Technics, Dresden, Germany |
5:00pm - 5:15pm |
Closing RemarksNeal Lindeman, MD
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